Anna Laddach

Capturing gene-cell duality in a cat's cradle

Authors (4)

Bioinformatics

Published 1 January 2026

Crick labs

Vassilis Pachnis

Full details

R Bioconductor pacakge CatsCradle

Authors (2)

Bioconductor

Published 11 January 2026

Crick labs

Vassilis Pachnis

Full details

Code associated with: Growth of the maternal intestine during reproduction

Authors (1)

Anna Laddach

GitHub

Published 31 March 2025

Crick labs/ facilities

Full details

GEO entry GSE285027: Growth of the maternal intestine during pregnancy and lactation [Xenium]

Authors (4)

Gene Expression Omnibus (GEO)

Published 19 March 2025

Crick labs/ facilities

Full details

Growth of the maternal intestine during reproduction

Authors (36)

Tomotsune Ameku
Anna Laddach
Hannah Beckwith
Alexandra Milona
Loranzie S Rogers
Cornelia Schwayer
[...]
Martin Schwarzer
François Leulier
Vassilis Pachnis
Nicholas W Bellono
Irene Miguel-Aliaga

Cell

Published 15 May 2025

Crick labs/ facilities

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TrajectoryGeometry suggests cell fate decisions can involve branches rather than bifurcations

Authors (3)

NAR Genomics and Bioinformatics

Published 1 December 2024

Crick labs

Vassilis Pachnis

Full details

TrajectoryGeometryData: NARGAB release for TrajectoryGeometry suggests cell fate decisions can involve branches rather than bifurcations

Authors (2)

Zenodo

Published 25 September 2024

Crick labs

Vassilis Pachnis

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A branching model of lineage differentiation underpinning the neurogenic potential of enteric glia

Authors (15)

Anna Laddach
Song Hui Chng
Reena Lasrado
Franze Progatzky
Michael Shapiro
Alek Erickson
[...]
Jens Kleinjung
Stefan Boeing
Sila Ultanir
Igor Adameyko
Vassilis Pachnis

Nature Communications

Published 22 September 2023

Crick labs/ facilities

Full details

GEO entry GSE241522: A branching model of lineage differentiation underpinning the neurogenic potential of enteric glia (bulk ATAC-seq data from ganglioid cultures)

Authors (12)

Anna Laddach
Song Hui Chng
Reena Lasrado
Franze Progatzky
Michael Shapiro
Marisol Sampedro Castaneda
[...]
Eleni Amaniti
Jens Kleinjung
Stefan Boeing
Sila Ultanir
Vassilis Pachnis

Gene Expression Omnibus (GEO)

Published 1 September 2023

Crick labs/ facilities

Full details

GEO entry GSE239305: A branching model of lineage differentiation underpinning the neurogenic potential of enteric glia (Single-cell ATAC-seq data for enteric glial cells)

Authors (12)

Anna Laddach
Song Hui Chng
Reena Lasrado
Franze Progatzky
Michael Shapiro
Marisol Sampedro Castaneda
[...]
Eleni Amaniti
Jens Kleinjung
Stefan Boeing
Sila Ultanir
Vassilis Pachnis

Gene Expression Omnibus (GEO)

Published 31 July 2023

Crick labs/ facilities

Full details

GEO entry GSE237970: A branching model of lineage differentiation underpinning the neurogenic potential of enteric glia (Single-cell expression analysis of neurogenic enteric glial cell cultures)

Authors (12)

Anna Laddach
Song Hui Chng
Reena Lasrado
Franze Progatzky
Michael Shapiro
Marisol Sampedro Castaneda
[...]
Eleni Amaniti
Jens Kleinjung
Stefan Boeing
Sila Ultanir
Vassilis Pachnis

Gene Expression Omnibus (GEO)

Published 26 July 2023

Crick labs/ facilities

Full details

GEO entry GSE237713: A branching model of lineage differentiation underpinning the neurogenic potential of enteric glia (Single-cell expression analysis of small intestine enteric nervous system developmental data)

Authors (12)

Anna Laddach
Song Hui Chng
Reena Lasrado
Franze Progatzky
Michael Shapiro
Marisol Sampedro Castaneda
[...]
Eleni Amaniti
Jens Kleinjung
Stefan Boeing
Sila Ultanir
Vassilis Pachnis

Gene Expression Omnibus (GEO)

Published 23 July 2023

Crick labs/ facilities

Full details

Regulation of intestinal immunity and tissue repair by enteric glia

Authors (18)

Franze Progatzky
Michael Shapiro
Song Hui Chng
Bethania Garcia-Cassani
Cajsa Classon
Selin Sevgi
[...]
Lewis J Entwistle
Alejandro Suárez-Bonnet
Mark Wilson
Brigitta Stockinger
Vassilis Pachnis

Nature

Published 20 October 2021

Crick labs/ facilities

Full details

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PhD students

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Anna Laddach

Postdoctoral Fellow

Pachnis lab

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Capturing gene-cell duality in a cat's cradle

R Bioconductor pacakge CatsCradle

Code associated with: Growth of the maternal intestine during reproduction

GEO entry GSE285027: Growth of the maternal intestine during pregnancy and lactation [Xenium]

Growth of the maternal intestine during reproduction

TrajectoryGeometry suggests cell fate decisions can involve branches rather than bifurcations

TrajectoryGeometryData: NARGAB release for TrajectoryGeometry suggests cell fate decisions can involve branches rather than bifurcations

A branching model of lineage differentiation underpinning the neurogenic potential of enteric glia

GEO entry GSE241522: A branching model of lineage differentiation underpinning the neurogenic potential of enteric glia (bulk ATAC-seq data from ganglioid cultures)

GEO entry GSE239305: A branching model of lineage differentiation underpinning the neurogenic potential of enteric glia (Single-cell ATAC-seq data for enteric glial cells)

GEO entry GSE237970: A branching model of lineage differentiation underpinning the neurogenic potential of enteric glia (Single-cell expression analysis of neurogenic enteric glial cell cultures)

GEO entry GSE237713: A branching model of lineage differentiation underpinning the neurogenic potential of enteric glia (Single-cell expression analysis of small intestine enteric nervous system developmental data)

Regulation of intestinal immunity and tissue repair by enteric glia

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