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Breadcrumb Jernej Ule Ule lab RNA Networks Laboratory : Publications Lab contentLab contentIn this section Overview Areas of interest Publications Members Vacancies Genes in the brain are very long and can be transcribed into diverse RNAs. Toggle to view hero caption PublicationsYear published (-)2022 (9) Facet Year publishedResearch topicsBiochemistry & Proteomics (9)Computational & Systems Biology (9)Gene Expression (9)Genetics & Genomics (9)Neurosciences (9)Stem Cells (9)Chemical Biology & High Throughput (3)Cell Biology (2)Genome Integrity & Repair (2)Infectious Disease (2)Metabolism (2)Model Organisms (2)Structural Biology & Biophysics (2)Synthetic Biology (2)Tumour Biology (2)Cell Cycle & Chromosomes (1)Developmental Biology (1)Human Biology & Physiology (1)Immunology (1)Signalling & Oncogenes (1) Facet Research topicsPublication typeJournal article (9)Primary research (9) Facet Publication typeJournalInternational Journal of Molecular Sciences (2)Nature (2)eLife (1)Genome Biology (1)Molecular Therapy - Nucleic Acids (1)Nature Communications (1)Nucleic Acids Research (1) Facet Journal Publications Displaying 1 - 9 of 9Last updated : 19 April 2024 02:33 N6-methyladenosine (m6A) reader Pho92 is recruited co-transcriptionally and couples translation to mRNA decay to promote meiotic fitness in yeast Authors (18) Radhika A VarierTheodora SideriCharlotte CapitanchikZornitsa ManovaEnrica CalvaniAlice Rossi[...] Michiel VermeulenMarkus RalserJernej UleNicholas LuscombeFolkert Van Werven eLife Published 24 November 2022 Crick labs/ facilitiesFolkert van WervenJernej UleMarkus RalserNicholas LuscombeProteomicsMetabolomicsBioinformatics and BiostatisticsFermentationAdvanced SequencingFull details Cell-specific bioorthogonal tagging of glycoproteins Authors (31)Anna CioceBea CalleTatiana Rizou Sarah C LoweryVicky Bridgeman Keira E Mahoney[...] Stuart M Haslam Sabine L Flitsch Stacy A MalakerIlaria MalanchiBen Schumann Nature Communications Published 25 October 2022 Crick labs/ facilitiesJernej UleBen SchumannIlaria MalanchiLuiz Pedro CarvalhoStructural BiologyProteomicsBioinformatics and BiostatisticsLight MicroscopyCell ServicesBiological Research FacilityAdvanced SequencingFull details CDK11 regulates pre-mRNA splicing by phosphorylation of SF3B1 Authors (15) Milan Hluchý Pavla GajduškováIgor Ruiz De Los Mozos Michal Rájecký Michael Kluge Benedict-Tilman Berger[...] Zbyněk Zdráhal Stefan Knapp Kamil Paruch Caroline C Friedel Dalibor Blazek Nature Published 22 September 2022 Crick labsJernej UleFull details Positional motif analysis reveals the extent of specificity of protein-RNA interactions observed by CLIP Authors (5) Klara Kuret Aram Gustav Amalietti D Marc JonesCharlotte CapitanchikJernej Ule Genome Biology Published 9 September 2022 Crick labsJernej UleFull details Identifying ribosome heterogeneity using ribosome profiling Authors (7) Ferhat AlkanOscar Wilkins Santiago Hernández-Pérez Sofia Ramalho Joana SilvaJernej Ule William J Faller Nucleic Acids Research Published 9 September 2022 Crick labsJernej UleFull details Determination of IgG1 and IgG3 SARS-CoV-2 spike protein and nucleocapsid binding-who is binding who and why? Authors (12) Jason K Iles Raminta Zmuidinaite Christoph Sadee Anna Gardiner Jonathan Lacey Stephen Harding[...] Roshani Patel Debra Roblett Jonathan Heeney Helen Baxendale Ray Kruse Iles International Journal of Molecular Sciences Published 27 May 2022 Crick labsJernej UleFull details U1A is a positive regulator of the expression of heterologous and cellular genes involved in cell proliferation and migration Authors (11) Eric Rovira Beatriz Moreno Nerea Razquin Roland Hjerpe Monika Gonzalez-Lopez Rosa Barrio Igor Ruiz De Los MozosJernej Ule Fernando Pastor Lorea Blazquez Puri Fortes Molecular Therapy - Nucleic Acids Published 14 June 2022 Crick labsJernej UleFull details SARS‐CoV‐2 spike protein binding of glycated serum albumin—its potential role in the pathogenesis of the COVID‐19 clinical syndromes and bias towards individuals with pre‐diabetes/type 2 diabetes and metabolic diseases Authors (11) Jason Iles Raminta Zmuidinaite Christoph Sadée Anna Gardiner Jonathan Lacey Stephen HardingJernej Ule Debra Roblett Jonathan Heeney Helen Baxendale Ray K Iles International Journal of Molecular Sciences Published 8 April 2022 Crick labsJernej UleFull details TDP-43 loss and ALS-risk SNPs drive mis-splicing and depletion of UNC13A Authors (32) Anna-Leigh BrownOscar Wilkins Matthew J Keuss Sarah E Hill Matteo Zanovello Weaverly Colleen Lee[...]Jernej Ule Emanuele Buratti Jack Humphrey Michael E Ward Pietro Fratta Nature Published 3 March 2022 Crick labs/ facilitiesJernej UleStructural BiologyFull details Share the page Share on Twitter Share on Facebook Share on LinkedIn Share on Email
N6-methyladenosine (m6A) reader Pho92 is recruited co-transcriptionally and couples translation to mRNA decay to promote meiotic fitness in yeast Authors (18) Radhika A VarierTheodora SideriCharlotte CapitanchikZornitsa ManovaEnrica CalvaniAlice Rossi[...] Michiel VermeulenMarkus RalserJernej UleNicholas LuscombeFolkert Van Werven eLife Published 24 November 2022 Crick labs/ facilitiesFolkert van WervenJernej UleMarkus RalserNicholas LuscombeProteomicsMetabolomicsBioinformatics and BiostatisticsFermentationAdvanced SequencingFull details
Cell-specific bioorthogonal tagging of glycoproteins Authors (31)Anna CioceBea CalleTatiana Rizou Sarah C LoweryVicky Bridgeman Keira E Mahoney[...] Stuart M Haslam Sabine L Flitsch Stacy A MalakerIlaria MalanchiBen Schumann Nature Communications Published 25 October 2022 Crick labs/ facilitiesJernej UleBen SchumannIlaria MalanchiLuiz Pedro CarvalhoStructural BiologyProteomicsBioinformatics and BiostatisticsLight MicroscopyCell ServicesBiological Research FacilityAdvanced SequencingFull details
CDK11 regulates pre-mRNA splicing by phosphorylation of SF3B1 Authors (15) Milan Hluchý Pavla GajduškováIgor Ruiz De Los Mozos Michal Rájecký Michael Kluge Benedict-Tilman Berger[...] Zbyněk Zdráhal Stefan Knapp Kamil Paruch Caroline C Friedel Dalibor Blazek Nature Published 22 September 2022 Crick labsJernej UleFull details
Positional motif analysis reveals the extent of specificity of protein-RNA interactions observed by CLIP Authors (5) Klara Kuret Aram Gustav Amalietti D Marc JonesCharlotte CapitanchikJernej Ule Genome Biology Published 9 September 2022 Crick labsJernej UleFull details
Identifying ribosome heterogeneity using ribosome profiling Authors (7) Ferhat AlkanOscar Wilkins Santiago Hernández-Pérez Sofia Ramalho Joana SilvaJernej Ule William J Faller Nucleic Acids Research Published 9 September 2022 Crick labsJernej UleFull details
Determination of IgG1 and IgG3 SARS-CoV-2 spike protein and nucleocapsid binding-who is binding who and why? Authors (12) Jason K Iles Raminta Zmuidinaite Christoph Sadee Anna Gardiner Jonathan Lacey Stephen Harding[...] Roshani Patel Debra Roblett Jonathan Heeney Helen Baxendale Ray Kruse Iles International Journal of Molecular Sciences Published 27 May 2022 Crick labsJernej UleFull details
U1A is a positive regulator of the expression of heterologous and cellular genes involved in cell proliferation and migration Authors (11) Eric Rovira Beatriz Moreno Nerea Razquin Roland Hjerpe Monika Gonzalez-Lopez Rosa Barrio Igor Ruiz De Los MozosJernej Ule Fernando Pastor Lorea Blazquez Puri Fortes Molecular Therapy - Nucleic Acids Published 14 June 2022 Crick labsJernej UleFull details
SARS‐CoV‐2 spike protein binding of glycated serum albumin—its potential role in the pathogenesis of the COVID‐19 clinical syndromes and bias towards individuals with pre‐diabetes/type 2 diabetes and metabolic diseases Authors (11) Jason Iles Raminta Zmuidinaite Christoph Sadée Anna Gardiner Jonathan Lacey Stephen HardingJernej Ule Debra Roblett Jonathan Heeney Helen Baxendale Ray K Iles International Journal of Molecular Sciences Published 8 April 2022 Crick labsJernej UleFull details
TDP-43 loss and ALS-risk SNPs drive mis-splicing and depletion of UNC13A Authors (32) Anna-Leigh BrownOscar Wilkins Matthew J Keuss Sarah E Hill Matteo Zanovello Weaverly Colleen Lee[...]Jernej Ule Emanuele Buratti Jack Humphrey Michael E Ward Pietro Fratta Nature Published 3 March 2022 Crick labs/ facilitiesJernej UleStructural BiologyFull details
