Ralser lab
Molecular Biology of Metabolism Laboratory
: Publications

Publications

Displaying 21 - 40 of 147

Last updated : 24 April 2024 03:06

Integration of protein context improves protein-based COVID-19 patient stratification

Authors (15)

Jinlong Gao
Jiale He
Fangfei Zhang
Qi Xiao
Xue Cai
Xiao Yi
[...]
Jing Wang
Bo Shen
Markus Ralser
Tiannan Guo
Yi Zhu

Clinical Proteomics

Published 11 August 2022

Crick labs

Markus Ralser

Full details

Microbe capture by splenic macrophages triggers sepsis via T cell-death-dependent neutrophil lifespan shortening

Authors (16)

Marianna Ioannou
Dennis Hoving
Iker Valle Aramburu
Mia Temkin
Nathalia M De Vasconcelos
Theodora Dorita Tsourouktsoglou
[...]
Markus Ralser
Sascha David
Klaus Stahl
Christian Bode
Venizelos Papayannopoulos

Nature Communications

Published 9 August 2022

Crick labs/ facilities

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Global analysis of cytosine and adenine DNA modifications across the tree of life

Authors (8)

Sreejith Jayasree Varma
Enrica Calvani
Nana-Maria Grüning
Christoph Messner
Nicholas Grayson
Floriana Capuano
Michael Mülleder
Markus Ralser

eLife

Published 28 July 2022

Crick labs/ facilities

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Increasing the throughput of sensitive proteomics by plexDIA

Authors (10)

Jason Derks
Andrew Leduc
Georg Wallmann
R Gray Huffman
Matthew Willetts
Saad Khan
Harrison Specht
Markus Ralser
Vadim Demichev
Nikolai Slavov

Nature Biotechnology

Published 1 January 2023

Crick labs

Markus Ralser

Full details

dia-PASEF data analysis using FragPipe and DIA-NN for deep proteomics of low sample amounts

Authors (13)

Vadim Demichev
Lukasz Szyrwiel
Fengchao Yu
Guo Ci Teo
George Rosenberger
Agathe Niewienda
[...]
Stephanie Kaspar-Schoenefeld
Kathryn S Lilley
Michael Mülleder
Alexey I Nesvizhskii
Markus Ralser

Nature Communications

Published 8 July 2022

Crick labs

Markus Ralser

Full details

Spermidine reduces neuroinflammation and soluble amyloid beta in an Alzheimer's disease mouse model

Authors (19)

Kiara Freitag
Nele Sterczyk
Sarah Wendlinger
Benedikt Obermayer
Julia Schulz
Vadim Farztdinov
[...]
Stephan J Sigrist
Thomas Conrad
Dieter Beule
Frank L Heppner
Marina Jendrach

Journal of Neuroinflammation

Published 2 July 2022

Crick labs

Markus Ralser

Full details

Editorial overview: The metabolic network

Authors (2)

Sarah-Maria Fendt
Markus Ralser

Current Opinion in Systems Biology

Published 1 September 2022

Crick labs

Markus Ralser

Full details

A multiplex protein panel assay for severity prediction and outcome prognosis in patients with COVID-19: An observational multi-cohort study

Authors (20)

Ziyue Wang
Adam Cryar
Oliver Lemke
Pinkus Tober-Lau
Daniela Ludwig
Elisa Theresa Helbig
[...]
Michael Mülleder
Florian Kurth
Ernestas Sirka
Johannes Hartl
Markus Ralser

EClinicalMedicine

Published 1 July 2022

Crick labs

Markus Ralser

Full details

Optimization of microflow LC coupled with Scanning SWATH and its application in hepatocellular carcinoma tissues

Authors (10)

Huanhuan Gao
Youqi Liu
Vadim Demichev
Stephen Tate
Chen Chen
Jiang Zhu
Cong Lu
Markus Ralser
Tiannan Guo
Yi Zhu

Journal of Proteome Research

Published 1 July 2022

Crick labs

Markus Ralser

Full details

An open invitation to the Understudied Proteins Initiative

Authors (11)

Georg Kustatscher
Tom Collins
Anne-Claude Gingras
Tiannan Guo
Henning Hermjakob
Trey Ideker
Kathryn S Lilley
Emma Lundberg
Edward M Marcotte
Markus Ralser
Juri Rappsilber

Nature Biotechnology

Published 1 June 2022

Crick labs

Markus Ralser

Full details

Understudied proteins: opportunities and challenges for functional proteomics

Authors (11)

Georg Kustatscher
Tom Collins
Anne-Claude Gingras
Tiannan Guo
Henning Hermjakob
Trey Ideker
Kathryn S Lilley
Emma Lundberg
Edward M Marcotte
Markus Ralser
Juri Rappsilber

Nature Methods

Published 1 July 2022

Crick labs

Markus Ralser

Full details

High-throughput, high-precision colony phenotyping with pyphe

Authors (3)

Methods in Molecular Biology

Published 1 May 2022

Crick labs

Markus Ralser

Full details

Single-cell RNA sequencing in yeast using the 10× genomics chromium device

Authors (5)

Lieselotte Vermeersch
Abbas Jariani
Jana Helsen
Benjamin M Heineike
Kevin J Verstrepen

Methods in Molecular Biology

Published 1 May 2022

Crick labs

Markus Ralser

Full details

Clinical characteristics with inflammation profiling of long COVID and association with 1-year recovery following hospitalisation in the UK: a prospective observational study

Authors (1)

PHOSP-COVID Collaborative Group

The Lancet Respiratory Medicine

Published 1 August 2022

Crick labs

Markus Ralser

Full details

Microbial communities form rich extracellular metabolomes that foster metabolic interactions and promote drug tolerance

Authors (19)

Jason SL Yu
Clara Correia-Melo
Francisco Zorrilla
Lucia Herrera-Dominguez
Mary Wu
Johannes Hartl
[...]
Michael Howell
Judith Berman
Kiran R Patil
Mohammad Tauqeer Alam
Markus Ralser

Nature Microbiology

Published 1 April 2022

Crick labs/ facilities

Full details

Age-related differences in structure and function of nasal epithelial cultures from healthy children and elderly people

Authors (17)

Anita Balázs
Pamela Millar-Büchner
Michael Mülleder
Vadim Farztdinov
Lukasz Szyrwiel
Annalisa Addante
[...]
Irina Lehmann
Birgit Sawitzki
Jobst Röhmel
Markus Ralser
Marcus A Mall

Frontiers in Immunology

Published 28 February 2022

Crick labs

Markus Ralser

Full details

A proteomic survival predictor for COVID-19 patients in intensive care

Authors (70)

Vadim Demichev
Pinkus Tober-Lau
Tatiana Nazarenko
Oliver Lemke
Simran Kaur Aulakh
Harry J Whitwell
[...]
Michael Mülleder
Leif Erik Sander
PA-COVID-19 Study group
Florian Kurth
Markus Ralser

PLOS Digital Health

Published 18 January 2022

Crick labs

Markus Ralser

Full details

Functional profiling of long intergenic non-coding RNAs in fission yeast

Authors (15)

Maria Rodriguez-Lopez
Shajahan Anver
Cristina Cotobal
Stephan Kamrad
Michal Malecki
Clara Correia-Melo
[...]
Mary Wu
Luis Montemayor
Michael Howell
Markus Ralser
Jürg Bähler

eLife

Published 5 January 2022

Crick labs/ facilities

Full details

Complement activation induces excessive T cell cytotoxicity in severe COVID-19

Authors (59)

Philipp Georg
Rosario Astaburuaga-García
Lorenzo Bonaguro
Sophia Brumhard
Laura Michalick
Lena J Lippert
[...]
Florian Kurth
Leif E Sander
Nils Blüthgen
Birgit Sawitzki
PA-COVID-19 Study Group

Cell

Published 3 February 2022

Crick labs

Markus Ralser

Full details

Cysteine and iron accelerate the formation of ribose-5-phosphate, providing insights into the evolutionary origins of the metabolic network structure

Authors (7)

Gabriel Piedrafita
Sreejith J Varma
Cecilia Castro
Christoph Messner
Lukasz Szyrwiel
Julian L Griffin
Markus Ralser

PLOS Biology

Published 3 December 2021

Crick labs

Markus Ralser

Full details

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Ralser lab
Molecular Biology of Metabolism Laboratory
: Publications

Lab content

Publications

Year published

Research topics

Crick/Pre-Crick

Publication type

Journal

Integration of protein context improves protein-based COVID-19 patient stratification

Microbe capture by splenic macrophages triggers sepsis via T cell-death-dependent neutrophil lifespan shortening

Global analysis of cytosine and adenine DNA modifications across the tree of life

Increasing the throughput of sensitive proteomics by plexDIA

dia-PASEF data analysis using FragPipe and DIA-NN for deep proteomics of low sample amounts

Spermidine reduces neuroinflammation and soluble amyloid beta in an Alzheimer's disease mouse model

Editorial overview: The metabolic network

A multiplex protein panel assay for severity prediction and outcome prognosis in patients with COVID-19: An observational multi-cohort study

Optimization of microflow LC coupled with Scanning SWATH and its application in hepatocellular carcinoma tissues

An open invitation to the Understudied Proteins Initiative

Understudied proteins: opportunities and challenges for functional proteomics

High-throughput, high-precision colony phenotyping with pyphe

Single-cell RNA sequencing in yeast using the 10× genomics chromium device

Clinical characteristics with inflammation profiling of long COVID and association with 1-year recovery following hospitalisation in the UK: a prospective observational study

Microbial communities form rich extracellular metabolomes that foster metabolic interactions and promote drug tolerance

Age-related differences in structure and function of nasal epithelial cultures from healthy children and elderly people

A proteomic survival predictor for COVID-19 patients in intensive care

Functional profiling of long intergenic non-coding RNAs in fission yeast

Complement activation induces excessive T cell cytotoxicity in severe COVID-19

Cysteine and iron accelerate the formation of ribose-5-phosphate, providing insights into the evolutionary origins of the metabolic network structure

The Francis Crick Institute is a unique partnership between

Research case studies

Postdoctoral clinical fellows

Hello Brain!

News and reports

About us

Lab content

Publications

Year published

Research topics

Crick/Pre-Crick

Publication type

Journal

Publications

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