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Toggle to view hero caption Bioinformatics and Biostatistics : Publications Lab MenuLab Menu Overview Publications Members Breadcrumb Research Platforms & facilities Bioinformatics and Biostatistics Publications Displaying 1 - 10 of 281Last updated : 12 April 2021 02:38 The migratory pathways of the cells that form the endocardium, dorsal aortae, and head vasculature in the mouse embryo Authors (8) C CollartAlessandro CiccarelliKenzo IvanovitchIan Rosewell S KumarGavin KellyMilly EdwardsJim Smith BMC developmental biology Published 22 March 2021 Crick labs/ facilitiesJim SmithLight MicroscopyBioinformatics and BiostatisticsAdvanced SequencingFull details Antiretroviral treatment-induced decrease in immune activation contributes to reduced susceptibility to Tuberculosis in HIV-1/Mtb co-infected persons Authors (8)Katalin Wilkinson Deborah Schneider-Luftman Rachel Lai Christopher Barrington Nishtha Jhilmeet David M LoweGavin KellyRobert Wilkinson Frontiers in Immunology Published 5 March 2021 Crick labs/ facilitiesRobert J WilkinsonBioinformatics and BiostatisticsAdvanced SequencingFull details Reactive astrocytes in ALS display diminished intron retention Authors (10)Oliver ZiffDoaa TahaHamish CrerarBen ClarkeAnob ChakrabartiGavin KellyJacob NeevesGiulia TyzackNicholas LuscombeRickie Patani Nucleic Acids Research Published 4 March 2021 Crick labs/ facilitiesRickie PataniNicholas LuscombeSonia GandhiBioinformatics and BiostatisticsScientific computingProteomicsAdvanced SequencingFull details EphB6 regulates TFEB-lysosomal pathway and survival of disseminated indolent breast cancer cells Authors (11) Manuela Zangrossi Patrizia Romani Probir ChakravartyColin RatcliffeSteven Hooper Martina Dori Mattia Forcato Silvio Bicciato Sirio DupontErik Sahai Marco Montagner Cancers Published 3 March 2021 Crick labs/ facilitiesErik SahaiBioinformatics and BiostatisticsFlow CytometryExperimental HistopathologyCell ServicesBiological Research FacilityAdvanced SequencingFull details A lung organotypic coculture reveals a role for TFEB-lysosomal axis in the survival of disseminated dormant cancer cells Authors (7) Manuela Zangrossi Probir Chakravarty Patrizia Romani Sirio DupontSteven HooperErik Sahai Marco Montagner Cancers (Basel) Published 28 February 2021 Crick labs/ facilitiesErik SahaiBioinformatics and BiostatisticsFlow CytometryExperimental HistopathologyCell ServicesBiological Research FacilityAdvanced SequencingFull details A functional taxonomy of tumor suppression in oncogenic KRAS-driven lung cancer Authors (21) Hongchen CaiSu Kit Chew Chuan Li Min K Tsai Laura Andrejka Christopher W Murray[...] Le Cong Christopher D McFarland Dmitri A PetrovCharles Swanton Monte M Winslow Cancer Discovery Published 19 February 2021 Crick labs/ facilitiesCharles SwantonGenomics/Equipment ParkBioinformatics and BiostatisticsAdvanced SequencingFull details SOX2 is required independently in both stem and differentiated cells for pituitary tumorigenesis in p27-null mice Authors (6)Veronica Moncho Amor Probir ChakravartyChristophe Galichet Ander MatheuRobin Lovell-BadgeKarine Rizzoti Proceedings of the National Academy of Sciences of USA Published 16 February 2021 Crick labs/ facilitiesRobin Lovell-BadgeBioinformatics and BiostatisticsLight MicroscopyFlow CytometryBiological Research FacilityAdvanced SequencingFull details Airway macrophage-intrinsic TGF-β1 regulates pulmonary immunity during early life allergen exposure Authors (10) William J Branchett James Cook Robert A Oliver Nicoletta Bruno Simone A Walker Helen Stӧlting Matthias MackAnne O'Garra Sejal Saglani Clare M Lloyd Journal of Allergy and Clinical Immunology Published 9 February 2021 Crick labs/ facilitiesAnne O’GarraBioinformatics and BiostatisticsAdvanced SequencingFull details Comparison of loop extrusion and diffusion capture as mitotic chromosome formation pathways in fission yeast Authors (7)Tereza GerguriXiao FuYasutaka Kakui Bhavin S Khatri Christopher BarringtonPaul BatesFrank Uhlmann Nucleic Acids Research Published 22 February 2021 Crick labs/ facilitiesFrank UhlmannPaul BatesBioinformatics and BiostatisticsLight MicroscopyAdvanced SequencingFull details Permissive selection followed by affinity-based proliferation of GC light zone B cells dictates cell fate and ensures clonal breadth Authors (11)Rinako Nakagawa Amparo Toboso-Navasa Marta SchipsGeorge Young Leena Bhaw-Rosun Miriam Llorian-Sopena Probir Chakravarty Abdul Karim SesayGeorge Kassiotis Michael Meyer-HermannDinis Calado Proceedings of the National Academy of Sciences of USA Published 12 January 2021 Crick labs/ facilitiesGeorge KassiotisDinis CaladoBioinformatics and BiostatisticsAdvanced SequencingLight MicroscopyFlow CytometryExperimental HistopathologyBiological Research FacilityFull details Pagination Current page 1 Page 2 Page 3 Page 4 Page 5 Page 6 Page 7 Page 8 Page 9 … Next page Next Last page Last Share the page Share on Twitter Share on Facebook Share on LinkedIn Share on Email
The migratory pathways of the cells that form the endocardium, dorsal aortae, and head vasculature in the mouse embryo Authors (8) C CollartAlessandro CiccarelliKenzo IvanovitchIan Rosewell S KumarGavin KellyMilly EdwardsJim Smith BMC developmental biology Published 22 March 2021 Crick labs/ facilitiesJim SmithLight MicroscopyBioinformatics and BiostatisticsAdvanced SequencingFull details
Antiretroviral treatment-induced decrease in immune activation contributes to reduced susceptibility to Tuberculosis in HIV-1/Mtb co-infected persons Authors (8)Katalin Wilkinson Deborah Schneider-Luftman Rachel Lai Christopher Barrington Nishtha Jhilmeet David M LoweGavin KellyRobert Wilkinson Frontiers in Immunology Published 5 March 2021 Crick labs/ facilitiesRobert J WilkinsonBioinformatics and BiostatisticsAdvanced SequencingFull details
Reactive astrocytes in ALS display diminished intron retention Authors (10)Oliver ZiffDoaa TahaHamish CrerarBen ClarkeAnob ChakrabartiGavin KellyJacob NeevesGiulia TyzackNicholas LuscombeRickie Patani Nucleic Acids Research Published 4 March 2021 Crick labs/ facilitiesRickie PataniNicholas LuscombeSonia GandhiBioinformatics and BiostatisticsScientific computingProteomicsAdvanced SequencingFull details
EphB6 regulates TFEB-lysosomal pathway and survival of disseminated indolent breast cancer cells Authors (11) Manuela Zangrossi Patrizia Romani Probir ChakravartyColin RatcliffeSteven Hooper Martina Dori Mattia Forcato Silvio Bicciato Sirio DupontErik Sahai Marco Montagner Cancers Published 3 March 2021 Crick labs/ facilitiesErik SahaiBioinformatics and BiostatisticsFlow CytometryExperimental HistopathologyCell ServicesBiological Research FacilityAdvanced SequencingFull details
A lung organotypic coculture reveals a role for TFEB-lysosomal axis in the survival of disseminated dormant cancer cells Authors (7) Manuela Zangrossi Probir Chakravarty Patrizia Romani Sirio DupontSteven HooperErik Sahai Marco Montagner Cancers (Basel) Published 28 February 2021 Crick labs/ facilitiesErik SahaiBioinformatics and BiostatisticsFlow CytometryExperimental HistopathologyCell ServicesBiological Research FacilityAdvanced SequencingFull details
A functional taxonomy of tumor suppression in oncogenic KRAS-driven lung cancer Authors (21) Hongchen CaiSu Kit Chew Chuan Li Min K Tsai Laura Andrejka Christopher W Murray[...] Le Cong Christopher D McFarland Dmitri A PetrovCharles Swanton Monte M Winslow Cancer Discovery Published 19 February 2021 Crick labs/ facilitiesCharles SwantonGenomics/Equipment ParkBioinformatics and BiostatisticsAdvanced SequencingFull details
SOX2 is required independently in both stem and differentiated cells for pituitary tumorigenesis in p27-null mice Authors (6)Veronica Moncho Amor Probir ChakravartyChristophe Galichet Ander MatheuRobin Lovell-BadgeKarine Rizzoti Proceedings of the National Academy of Sciences of USA Published 16 February 2021 Crick labs/ facilitiesRobin Lovell-BadgeBioinformatics and BiostatisticsLight MicroscopyFlow CytometryBiological Research FacilityAdvanced SequencingFull details
Airway macrophage-intrinsic TGF-β1 regulates pulmonary immunity during early life allergen exposure Authors (10) William J Branchett James Cook Robert A Oliver Nicoletta Bruno Simone A Walker Helen Stӧlting Matthias MackAnne O'Garra Sejal Saglani Clare M Lloyd Journal of Allergy and Clinical Immunology Published 9 February 2021 Crick labs/ facilitiesAnne O’GarraBioinformatics and BiostatisticsAdvanced SequencingFull details
Comparison of loop extrusion and diffusion capture as mitotic chromosome formation pathways in fission yeast Authors (7)Tereza GerguriXiao FuYasutaka Kakui Bhavin S Khatri Christopher BarringtonPaul BatesFrank Uhlmann Nucleic Acids Research Published 22 February 2021 Crick labs/ facilitiesFrank UhlmannPaul BatesBioinformatics and BiostatisticsLight MicroscopyAdvanced SequencingFull details
Permissive selection followed by affinity-based proliferation of GC light zone B cells dictates cell fate and ensures clonal breadth Authors (11)Rinako Nakagawa Amparo Toboso-Navasa Marta SchipsGeorge Young Leena Bhaw-Rosun Miriam Llorian-Sopena Probir Chakravarty Abdul Karim SesayGeorge Kassiotis Michael Meyer-HermannDinis Calado Proceedings of the National Academy of Sciences of USA Published 12 January 2021 Crick labs/ facilitiesGeorge KassiotisDinis CaladoBioinformatics and BiostatisticsAdvanced SequencingLight MicroscopyFlow CytometryExperimental HistopathologyBiological Research FacilityFull details
