Genomics methods for Xenopus embryos and tissues
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Michael J Gilchrist Ken WY Cho Gert Jan C VeenstraAbstract
High-throughput sequencing methods have created exciting opportunities to explore the regulatory landscape of the entire genome. Here we introduce methods to characterize the genomic locations of bound proteins, open chromatin, and sites of DNA-DNA contact in Xenopus embryos. These methods include chromatin immunoprecipitation followed by sequencing (ChIP-seq), a combination of DNase I digestion and sequencing (DNase-seq), the assay for transposase-accessible chromatin and sequencing (ATAC-seq), and the use of proximity-based DNA ligation followed by sequencing (Hi-C).
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Journal Cold Spring Harbor Protocols
Volume 2020
Issue number 5
Pages pdb.top097915
Available online
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Publisher website (DOI) 10.1101/pdb.top097915
Europe PubMed Central 32123020
Pubmed 32123020
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