Introduction to QuPath for image analysis

This half-day beginner’s course is designed for researchers looking to learn the necessary skills to visualise and analyse their microscopy data, in particular whole slide images, using the open-source QuPath application.

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Course info

This half-day beginner’s course is designed for researchers looking to learn the necessary skills to visualise and analyse their microscopy data, in particular whole slide images, using the open-source QuPath application. 

Held at the Francis Crick Institute in London, mixing classroom-based theory with practical sessions, the course provides an understanding of the basic concepts at the heart of QuPath. 

No prior experience is required, although a basic knowledge of microscopy and image acquisition will be beneficial.

The course has been developed by experts from the Crick Advanced Light Microscopy (CALM) science technology platform, which provides cutting-edge imaging and image analysis services and training to researchers across the institute.

By the end of this training, participants will be able to: 

  • Explain why automating image analysis pipelines is crucial for scientific reproducibility 
  • Perform common image analysis tasks using the QuPath on both hematoxylin and eosin (H&E) and immunofluorescence datasets 

This training is limited to 12 participants. Candidates are required to apply by completing the form below by Monday 31 August, detailing their relevant experience and the expected impact of this training on their professional practice.  

Applications will be reviewed by the lead educators and successful candidates will be invited to register by Friday 11 September.   

This is a FREE course and open only to staff and students from the Francis Crick Institute and partner universities: Imperial College London, UCL (University College London), and King’s College London.

By applying and/or registering to this course, you acknowledge that you have read, understood, and agreed to the Terms and Conditions.

Have a question?

Contact our technical training team at techtraining@crick.ac.uk

Programme

This event is part of a series of four workshops

Application form

Your experience

What kind of microscopy do you routinely perform/work with?
Do you already have image data to analyse?
Do you have experience of coding?
Don't worry if you don't - you can still apply!
Source Destination
Ilastik
FIJI/ImageJ
CellProfiler
QuPath
Napari
Imaris

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